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BIEN 4320/5320 Biomedical Instrumentation Design—Fundamentals of solving instrumentation problems relating to biomedical and physiological measurements
BIEN 4931/5931/6931 Special Topics in BME—Optics
Tyrell To, Tongtong Lu, Julie M. Jorns, Mollie Patton, Taly Gilat-Schmidt, Tina Yen, Bing Yu, and Dong Hye Ye, “Deep Learning Classification of Deep Ultraviolet Fluorescence Images toward Intra-Operative Margin Assessment in Breast Cancer", Frontiers in Oncology 13, 1179025, 16 June 2023. doi: 10.3389/fonc.2023.1179025.
Tongtong Lu, Julie M. Jorns, Dong Hye Ye, Mollie Patton, Renee Fisher, Amanda Emmrich, Taly Gilat-Schmidt, Tina Yen, and Bing Yu, "Automated assessment of breast margins in deep ultraviolet fluorescence images using texture analysis," Biomedical Optics Express, Vol. 13, No. 8, 2022 08/01/2022, doi: 10.1364/BOE.464547.
S. Voulgarelis, F. Fathi, B.Yu, B. Palkovic, N.A. Chatzizacharias, K.P. Allen, A.G. Stucke, "Hepatic artery flow, inspired oxygen, and hemoglobin determine liver tissue saturation measured with visible diffuse reflectance spectroscopy (vis-DRS) in an in vivo swine model," Pediatr Transplant. 2022 Jan 22:e14230. doi: 10.1111/petr.14230. Epub ahead of print. PMID: 35064720.
S. Voulgarelis, F. Fathi, A.G. Stucke, K.D. Daley, J. Kim, M.A. Zimmerman, J.C. Hong, N. Starkey, K.P. Allen, B. Yu, "Evaluation of visible diffuse reflectance spectroscopy in liver tissue: validation of tissue saturations using extracorporeal circulation," J Biomed Opt. 26(5), 055002 (2021), doi: 10.1117/1.JBO.26.5.055002. PMID: 340215372021.
Tongtong Lu, Julie M. Jorns, Mollie Patton, Renee Fisher, Amanda Emmrich, Todd Doehring, Taly Gilat Schmidt, Dong Hye Ye, Tina Yen, Bing Yu, "Rapid assessment of breast tumor margins using deep ultraviolet fluorescence scanning microscopy," J. Biomed. Opt. 25(12), 126501 (2020), doi: 10.1117/1.JBO.25.12.126501. (Appeared on the cover page of the Journal).
Ullah, R.; Doerfer, K.; Khampang, P.; Fathi, F.; Hong, W.; Kerschner, J.E.; Yu, B., Real-Time Optical Monitoring of Endotracheal Tube Displacement. Biosensors 10(174), 2020.
VK Nagarajan, JM Ward, and B Yu, “Association of Liver Tissue Optical Properties and Thermal Damage,” Lasers in Surgery and Medicine, 09 January 2020.
Benej M, Hong X, Vibhute S, Scott S, Wu J, Graves E, Le QT, Koong AC, Giaccia AJ, Yu B, Chen CS, Papandreou I, Denko NC. Papaverine and its derivatives radiosensitize solid tumors by inhibiting mitochondrial metabolism. Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10756-10761. doi: 10.1073/pnas.1808945115. Epub 2018 Sep 10. Erratum in: Proc Natl Acad Sci U S A. 2018 Dec 4;115(49):E11561. PMID: 30201710; PMCID: PMC6196495.
Nagarajan VK, Gogineni VR, White SB, Yu B. Real time evaluation of tissue optical properties during thermal ablation of ex vivo liver tissues. Int J Hyperthermia. 2019 Jan 1;35(1):176-182. doi: 10.1080/02656736.2018.1488278. Epub 2018 Aug 21. PMID: 30130988.
P Edwards, C Zhang, B Zhang, X Hong, VK Nagarajan, B Yu, Z Liu, “Smartphone based optical
spectrometer for diffusive reflectance spectroscopic measurement of hemoglobin,” Scientific reports 7 (1), 12224, 2017.
Xiangqian Hong, Vivek K. Nagarajan, Dale H. Mugler and Bing Yu, “Smartphone microendoscopy for high resolution fluorescence imaging,” Journal of Innovative Optical Health Sciences, Vol.09, No. 05, 2016.
Vivek K. Nagarajan and Bing Yu, “Monitoring of tissue optical properties during thermal coagulation of ex vivo tissues,” Lasers Surg. Med., June 1, 2016. doi: 10.1002/lsm.22541.